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CODEX® is now PhenoCycler, Phenoptics™ is now Phenolmager.

PhenoImager Data Analysis Using QuPath and Python

Webinar | June 22, 2023 | 8:00 AM PDT | 11:00 AM EDT

In this webinar, Akoya Biosciences’ application scientists Aditya and Ning will present a framework for analyzing multiplex immunofluorescence images generated on the PhenoImager platform. Learn about key steps from segmentation to phenotyping and downstream analysis. Example datasets focused on non-small cell lung cancer (NSCLC) will be used to provide insights into the predictive spatial signatures that could guide immunotherapy treatment. In addition, they demonstrate how to use open-source tools such as QuPath and Python to compute spatial signatures like ‘SpatialScore’, adapted from Garry Nolan’s lab.

Key learning objectives

  • Gain a comprehensive understanding of the PhenoImager data analysis workflow
  • Explore open-source data analysis pipeline using QuPath and Python
  • Enhance your ability to interpret complex spatial phenotypes and extract valuable information such as SpatialScore

Video

video-phenoimager-data-analysis-using-qupath-and-python

Speaker

Ning Ma

Dr. Ning Ma

Senior Application Scientist
Akoya Biosciences
Aditya Pratapa

Dr. Aditya Pratapa

Application Scientist
Akoya Biosciences